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From systems to structure: bridging networks and mechanism.
Fraser JS, Gross JD, Krogan NJ.
Mol Cell. 2013 Jan 24;49(2):222-31. doi: 10.1016/j.molcel.2013.01.003.
PMID: 23352243 [PubMed - in process]
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Quantitation of HIV DNA integration: Effects of differential integration site distributions on Alu-PCR assays.
Brady T, Kelly BJ, Male F, Roth S, Bailey A, Malani N, Gijbsers R, O'Doherty U, Bushman FD.
J Virol Methods. 2013 Jan 21. doi:pii: S0166-0934(13)00009-8. 10.1016/j.jviromet.2013.01.004. [Epub ahead of print]
PMID: 23348058 [PubMed - as supplied by publisher]
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Inhibition of a NEDD8 Cascade Restores Restriction of HIV by APOBEC3G.
Stanley DJ, Bartholomeeusen K, Crosby DC, Kim DY, Kwon E, Yen L, Cartozo NC, Li M, Jäger S, Mason-Herr J, Hayashi F, Yokoyama S, Krogan NJ, Harris RS, Peterlin BM, Gross JD.
PLoS Pathog. 2012 Dec;8(12):e1003085. doi: 10.1371/journal.ppat.1003085. Epub 2012 Dec 27.
PMID: 23300442 [PubMed - in process]
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Control of RelB during dendritic cell activation integrates canonical and noncanonical NF-?B pathways.
Shih VF, Davis-Turak J, Macal M, Huang JQ, Ponomarenko J, Kearns JD, Yu T, Fagerlund R, Asagiri M, Zuniga EI, Hoffmann A.
Nat Immunol. 2012 Dec;13(12):1162-70. doi: 10.1038/ni.2446. Epub 2012 Oct 21.
PMID: 23086447 [PubMed - indexed for MEDLINE]
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DENV inhibits type I IFN production in infected cells by cleaving human STING.
Aguirre S, Maestre AM, Pagni S, Patel JR, Savage T, Gutman D, Maringer K, Bernal-Rubio D, Shabman RS, Simon V, Rodriguez-Madoz JR, Mulder LC, Barber GN, Fernandez-Sesma A.
PLoS Pathog. 2012 Oct;8(10):e1002934. doi: 10.1371/journal.ppat.1002934. Epub 2012 Oct 4.
PMID: 23055924 [PubMed - in process]
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Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11.
Li M, Kao E, Gao X, Sandig H, Limmer K, Pavon-Eternod M, Jones TE, Landry S, Pan T, Weitzman MD, David M.
Nature. 2012 Nov 1;491(7422):125-8. doi: 10.1038/nature11433. Epub 2012 Sep 23.
PMID: 23000900 [PubMed - indexed for MEDLINE]
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Microwell devices with finger-like channels for long-term imaging of HIV-1 expression kinetics in primary human lymphocytes.
Razooky BS, Gutierrez E, Terry VH, Spina CA, Groisman A, Weinberger LS.
Lab Chip. 2012 Nov 7;12(21):4305-12. doi: 10.1039/c2lc40170c.
PMID: 22976503 [PubMed - in process]
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Dynamic regulation of HIV-1 mRNA populations analyzed by single-molecule enrichment and long-read sequencing.
Ocwieja KE, Sherrill-Mix S, Mukherjee R, Custers-Allen R, David P, Brown M, Wang S, Link DR, Olson J, Travers K, Schadt E, Bushman FD.
Nucleic Acids Res. 2012 Nov 1;40(20):10345-55. doi: 10.1093/nar/gks753. Epub 2012 Aug 25.
PMID: 22923523 [PubMed - indexed for MEDLINE]
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Functional genomic and high-content screening for target discovery and deconvolution.
Heynen-Genel S, Pache L, Chanda SK, Rosen J.
Expert Opin Drug Discov. 2012 Oct;7(10):955-68. Epub 2012 Aug 4. Review.
PMID: 22860749 [PubMed - indexed for MEDLINE]
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Comparative interaction networks: bridging genotype to phenotype.
Beltrao P, Ryan C, Krogan NJ.
Adv Exp Med Biol. 2012;751:139-56. doi: 10.1007/978-1-4614-3567-9_7. Review.
PMID: 22821457 [PubMed - indexed for MEDLINE]
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Systematic functional prioritization of protein posttranslational modifications.
Beltrao P, Albanèse V, Kenner LR, Swaney DL, Burlingame A, Villén J, Lim WA, Fraser JS, Frydman J, Krogan NJ.
Cell. 2012 Jul 20;150(2):413-25. doi: 10.1016/j.cell.2012.05.036.
PMID: 22817900 [PubMed - indexed for MEDLINE]
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Moloney leukemia virus type 10 inhibits reverse transcription and retrotransposition of intracisternal a particles.
Lu C, Luo Z, Jäger S, Krogan NJ, Peterlin BM.
J Virol. 2012 Oct;86(19):10517-23. doi: 10.1128/JVI.00868-12. Epub 2012 Jul 18.
PMID: 22811528 [PubMed - indexed for MEDLINE]
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Cofactors required for TLR7- and TLR9-dependent innate immune responses.
Chiang CY, Engel A, Opaluch AM, Ramos I, Maestre AM, Secundino I, De Jesus PD, Nguyen QT, Welch G, Bonamy GM, Miraglia LJ, Orth AP, Nizet V, Fernandez-Sesma A, Zhou Y, Barton GM, Chanda SK.
Cell Host Microbe. 2012 Mar 15;11(3):306-18. doi: 10.1016/j.chom.2012.02.002.
PMID: 22423970 [PubMed - indexed for MEDLINE]
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Vif hijacks CBF-b to degrade APOBEC3G and promote HIV-1 infection.
Jager S, Kim DY, Hultquist JF, Shindo K, LaRue RS, Kwon E, Li M, Anderson BD, Yen L, Stanley D, Mahon C, Kane J, Franks-Skiba K, Cimermancic P, Burlingame A, Sali A, Craik CS, Harris RS, Gross JD, Krogan NJ.
Nature. 2011 Dec 21;481(7381):371-5. doi: 10.1038/nature10693.
PMID: 22190037 [PubMed - indexed for MEDLINE]
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Global landscape of HIV-human protein complexes.
Jager S, Cimermancic P, Gulbahce N, Johnson JR, McGovern KE, Clarke SC, Shales M, Mercenne G, Pache L, Li K, Hernandez H, Jang GM, Roth SL, Akiva E, Marlett J, Stephens M, D'Orso I, Fernandes J, Fahey M, Mahon C, O'Donoghue AJ, Todorovic A, Morris JH, Maltby DA, Alber T, Cagney G, Bushman FD, Young JA, Chanda SK, Sundquist WI, Kortemme T, Hernandez RD, Craik CS, Burlingame A, Sali A, Frankel AD, Krogan NJ.
Nature. 2011 Dec 21;481(7381):365-70. doi: 10.1038/nature10719.
PMID: 22190034 [PubMed - indexed for MEDLINE]
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SAMHD1-deficient CD14+ cells from individuals with Aicardi-Goutières syndrome are highly susceptible to HIV-1 infection.
Berger A, Sommer AF, Zwarg J, Hamdorf M, Welzel K, Esly N, Panitz S, Reuter A, Ramos I, Jatiani A, Mulder LC, Fernandez-Sesma A, Rutsch F, Simon V, Konig R, Flory E.
PLoS Pathog. 2011 Dec;7(12):e1002425. doi: 10.1371/journal.ppat.1002425. Epub 2011 Dec 8.
PMID: 22174685 [PubMed - indexed for MEDLINE]
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Induction and evasion of type I interferon responses by influenza viruses.
Garcia-Sastre A.
Virus Res. 2011 Dec;162(1-2):12-8. doi: 10.1016/j.virusres.2011.10.017. Epub 2011 Oct 21. Review.
PMID: 22027189 [PubMed - indexed for MEDLINE]
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The activity spectrum of Vif from multiple HIV-1 subtypes against APOBEC3G, APOBEC3F, and APOBEC3H.
Binka M, Ooms M, Steward M, Simon V.
J Virol. 2012 Jan;86(1):49-59. doi: 10.1128/JVI.06082-11. Epub 2011 Oct 19.
PMID: 22013041 [PubMed - indexed for MEDLINE]
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GPS-Prot: a web-based visualization platform for integrating host-pathogen interaction data.
Fahey ME, Bennett MJ, Mahon C, Jäger S, Pache L, Kumar D, Shapiro A, Rao K, Chanda SK, Craik CS, Frankel AD, Krogan NJ.
BMC Bioinformatics. 2011 Jul 22;12:298. doi: 10.1186/1471-2105-12-298.
PMID: 21777475 [PubMed - indexed for MEDLINE]